Institut für Experimentelle Biomedizin
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Sonstige beteiligte Institutionen
Background
Epigenetic modifications may play a relevant role in the pathogenesis of human abdominal aortic aneurysm (AAA). The aim of the study was therefore to investigate histone acetylation and expression of corresponding lysine [K] histone acetyltransferases (KATs) in AAA.
Results
A comparative study of AAA tissue samples (n = 37, open surgical intervention) and healthy aortae (n = 12, trauma surgery) was performed using quantitative PCR, immunohistochemistry (IHC), and Western blot. Expression of the KAT families GNAT (KAT2A, KAT2B), p300/CBP (KAT3A, KAT3B), and MYST (KAT5, KAT6A, KAT6B, KAT7, KAT8) was significantly higher in AAA than in controls (P ≤ 0.019). Highest expression was observed for KAT2B, KAT3A, KAT3B, and KAT6B (P ≤ 0.007). Expression of KAT2B significantly correlated with KAT3A, KAT3B, and KAT6B (r = 0.705, 0.564, and 0.528, respectively, P < 0.001), and KAT6B with KAT3A, KAT3B, and KAT6A (r = 0.407, 0.500, and 0.531, respectively, P < 0.05). Localization of highly expressed KAT2B, KAT3B, and KAT6B was further characterized by immunostaining. Significant correlations were observed between KAT2B with endothelial cells (ECs) (r = 0.486, P < 0.01), KAT3B with T cells and macrophages, (r = 0.421 and r = 0.351, respectively, P < 0.05), KAT6A with intramural ECs (r = 0.541, P < 0.001) and with a contractile phenotype of smooth muscle cells (SMCs) (r = 0.425, P < 0.01), and KAT6B with T cells (r = 0.553, P < 0.001). Furthermore, KAT2B was associated with AAA diameter (r = 0.382, P < 0.05), and KAT3B, KAT6A, and KAT6B correlated negatively with blood urea nitrogen (r = −0.403, −0.408, −0.478, P < 0.05). In addtion, acetylation of the histone substrates H3K9, H3K18 and H3K14 was increased in AAA compared to control aortae.
Conclusions
Our results demonstrate that aberrant epigenetic modifications such as changes in the expression of KATs and acetylation of corresponding histones are present in AAA. These findings may provide new insight in the pathomechanism of AAA.
LASP1 spielt eine Schlüsselrolle in verschiedenen physiologischen und pathologischen Prozessen, wie etwa in der Entwicklung, Zellstruktur, Zellkommunikation, Tumorgenese und Metastasierung. Die Vielseitigkeit von LASP1 ist hauptsächlich durch seine besondere Proteinstruktur bedingt, die eine Interaktion mit vielen verschiedenen Bindepartnern ermöglicht. Effekte von LASP1 werden aber wahrscheinlich nicht nur durch cytosolische Interaktion mit Bindepartnern vermittelt, sondern auch, in Folge einer Translokation in den Zellkern, durch nukleäre Interaktion, evtl. als transkriptioneller Co-Faktor.
Besonders die Rolle von LASP1 in diversen Krebserkrankungen stand in den letzten Jahren im Fokus der Forschung. Sowohl in Karzinomen, als auch in Medulloblastom und Leukämien wächst die Evidenz für eine LASP1-Überexpression, die vor allem durch fehlende microRNA Regulation und Mutationen im p53 Tumorsuppressor bedingt scheint. Die hohe LASP1-Expression konnte in vielen in vitro und in vivo Studien mit vermehrter Proliferation, Migration und/ oder Invasion von Krebszelllinien in direkten Zusammenhang gebracht werden. Dieser Effekt von LASP1 auf Tumoraggressivität ist eine mögliche Erklärung für die mit hoher LASP1-Expression korrelierte schlechtere Prognose in verschiedenen Krebserkrankungen.
Das Transitionalzellkarzinom ist die fünfhäufigste Krebserkrankung des Menschen und weist eine hohe Rezidivrate auf. Daher sind regelmäßige Nachsorgeuntersuchungen notwendig. Angesichts bisher fehlender verlässlicher Biomarker für das Transitionalzellkarzinom ist die Zystoskopie weiterhin der Goldstandard in der Nachsorge. Diese wird aber von Patienten als unangenehm empfunden, ist mit einem Infektionsrisiko verbunden, von der Erfahrung des Untersuchers abhängig und kostenintensiv. Tatsächlich ist das Transitionalzellkarzinom eine der teuersten Krebserkrankungen in der Nachsorge, weshalb die Entwicklung alternativer Diagnostikverfahren auch gesundheitsökonomische Relevanz hat.
LASP1 wurde als ein vielversprechender Biomarker des Transitionalzellkarzinom-Rezidivs identifiziert, der durch einfache Proteinmengenbestimmung mittels Western Blot im Urinpellet evaluiert werden kann. Zum damaligen Zeitpunkt gab es außerdem bereits erste Hinweise auf eine funktionelle Relevanz von LASP1 im Blasenkarzinom in vitro.
Angesichts dieser Erkenntnisse wurden als Ziele dieser Arbeit formuliert, 1) die Generierung von stabil transfizierten, induzierbar LASP1 spezifische shRNA exprimierenden Transitionalzellkarzinomzelllinien, 2) die funktionelle Charakterisierung eines LASP1-Knockdowns in selbigen in vitro, und 3) der Vergleich von Eigenschaften von LASP1 im Transitionalzellkarzinom mit denen in anderen Karzinomen.
Für die zwei Transitionalzellkarzinomzelllinien T24 und RT4 konnte eine 4-5-Fache LASP1-Überexpression, verglichen mit normalem Urothel, gezeigt werden. Beide Zelllinien wurden erfolgreich mit einem induzierbar shRNA gegen LASP1 exprimierenden Konstrukt transduziert, sodass ein 50 % LASP1-Knockdown durch Doxycyclin induziert werden kann. Bei der Evaluierung des Effektes des LASP1-Knockdowns auf die Adhäsion, Proliferation und Migration dieser Zelllinien in vitro konnte eine signifikante Reduktion der Migration in beiden Zelllinien nachgewiesen werden. Passend dazu ergab eine GSEA von TCGA Daten zum Blasenkarzinom eine Korrelation von LASP1-Expression mit diversen Gen-Sets, die mit dem Phänotyp Metastasierung annotiert sind. Des Weiteren konnte für T24 und RT4 eine nukleäre LASP1-Lokalisation nachgewiesen werden, die abhängig von der Serin-146 Phosphorylierung war. Bioinformatische Analysen ergaben eine hochsignifikante, negative Korrelation von LASP1-Expression und miR-203 im Blasenkarzinom.
Eine Korrelation von LASP1-Expression mit Prognose konnte mittels TCGA Daten für das Blasenkarzinom nicht festgestellt werden. Jedoch lagen lediglich Expressionsdaten auf mRNA Level vor, die meisten LASP1 mit Prognose assoziierenden Studien basieren hingegen auf Immunhistochemie, also der Expression auf Proteinlevel, welche in Blasenkrebszelllinien von der Expression auf mRNA Level abweichen kann.
Die generierten Zelllinien wiesen nach lentiviraler Transduktion, Selektion und Sorten im Vergleich zum Wildtyp teilweise veränderte Zelleigenschaften auf, und ein Verlust des Fluoreszenzsignals des der shRNA vorangestellten tRFP wurde beobachtet. Daher müssen die Zellen bei weiterer Verwendung regelmäßig mit Puromycin nachselektioniert werden und die Validität dieser Zellen als Modell für das Transitionalzellkarzinom, besonders im Xenograft Mausmodell, ist kritisch zu hinterfragen.
Entsprechend sind die Ergebnisse dieser Arbeit im Einklang mit bisherigen Studien zu LASP1. Damit unterstreicht diese Arbeit einmal mehr die Relevanz von LASP1 in diversen Krebserkrankungen. Weitere Studien zum Wert von LASP1 als prognostischer oder gar diagnostischer Marker erscheinen daher vielversprechend.
Background:
Ischemic stroke causes a strong inflammatory response that includes T cells, monocytes/macrophages, and neutrophils. Interaction of these immune cells with platelets and endothelial cells facilitates microvascular dysfunction and leads to secondary infarct growth. We recently showed that blocking of platelet glycoprotein (GP) receptor Ib improves stroke outcome without increasing the risk of intracerebral hemorrhage. Until now, it has been unclear whether GPIb only mediates thrombus formation or also contributes to the pathophysiology of local inflammation.
Methods:
Focal cerebral ischemia was induced in C57BL/6 mice by a 60-min transient middle cerebral artery occlusion (tMCAO). Animals were treated with antigen-binding fragments (Fab) against the platelet surface molecules GPIb (p0p/B Fab). Rat immunoglobulin G (IgG) Fab was used as control treatment. Stroke outcome, including infarct size and functional deficits as well as the local inflammatory response, was assessed on day 1 after tMCAO.
Results:
Blocking of GPIb reduced stroke size and improved functional outcome on day 1 after tMCAO without increasing the risk of intracerebral hemorrhage. As expected, disruption of GPIb-mediated pathways in platelets significantly reduced thrombus burden in the cerebral microvasculature. In addition, inhibition of GPIb limited the local inflammatory response in the ischemic brain as indicated by lower numbers of infiltrating T cells and macrophages and lower expression levels of inflammatory cytokines compared with rat IgG Fab-treated controls.
Conclusion:
In acute ischemic stroke, thrombus formation and inflammation are closely intertwined (“thrombo-inflammation”). Blocking of platelet GPIb can ameliorate thrombo-inflammation.
Background:
Heritable bleeding and platelet disorders (BPD) are heterogeneous and frequently have an unknown genetic basis. The BRIDGE-BPD study aims to discover new causal genes for BPD by high throughput sequencing using cluster analyses based on improved and standardised deep, multi-system phenotyping of cases.
Methods:
We report a new approach in which the clinical and laboratory characteristics of BPD cases are annotated with adapted Human Phenotype Ontology (HPO) terms. Cluster analyses are then used to characterise groups of cases with similar HPO terms and variants in the same genes. Results:
We show that 60% of index cases with heritable BPD enrolled at 10 European or US centres were annotated with HPO terms indicating abnormalities in organ systems other than blood or blood-forming tissues, particularly the nervous system. Cases within pedigrees clustered closely together on the bases of their HPO-coded phenotypes, as did cases sharing several clinically suspected syndromic disorders. Cases subsequently found to harbour variants in ACTN1 also clustered closely, even though diagnosis of this recently described disorder was not possible using only the clinical and laboratory data available to the enrolling clinician.
Conclusions:
These findings validate our novel HPO-based phenotype clustering methodology for known BPD, thus providing a new discovery tool for BPD of unknown genetic basis. This approach will also be relevant for other rare diseases with significant genetic heterogeneity.
Lung cancer is currently the leading cause of cancer related mortality due to late diagnosis and limited treatment intervention. Non-coding RNAs are not translated into proteins and have emerged as fundamental regulators of gene expression. Recent studies reported that microRNAs and long non-coding RNAs are involved in lung cancer development and progression. Moreover, they appear as new promising non-invasive biomarkers for early lung cancer diagnosis. Here, we highlight their potential as biomarker in lung cancer and present how bioinformatics can contribute to the development of non-invasive diagnostic tools. For this, we discuss several bioinformatics algorithms and software tools for a comprehensive understanding and functional characterization of microRNAs and long non-coding RNAs.
Limited comprehension of aneurysm pathology has led to inconclusive results from clinical trials. miRNAs are key regulators of post-translational gene modification and are useful tools in elucidating key features of aneurysm pathogenesis in distinct entities of abdominal and popliteal aneurysms. Here, surgically harvested specimens from 19 abdominal aortic aneurysm (AAA) and 8 popliteal artery aneurysm (PAA) patients were analyzed for miRNA expression and histologically classified regarding extracellular matrix (ECM) remodeling and inflammation. DIANA-based computational target prediction and pathway enrichment analysis verified our results, as well as previous ones. miRNA-362, -19b-1, -194, -769, -21 and -550 were significantly down-regulated in AAA samples depending on degree of inflammation. Similar or inverse regulation was found for miR-769, 19b-1 and miR-550, -21, whereas miR-194 and -362 were unaltered in PAA. In situ hybridization verified higher expression of miR-550 and -21 in PAA compared to AAA and computational analysis for target genes and pathway enrichment affirmed signal transduction, cell-cell-interaction and cell degradation pathways, in line with previous results. Despite the vague role of miRNAs for potential diagnostic and treatment purposes, the number of candidates from tissue signature studies is increasing. Tissue morphology influences subsequent research, yet comparison of distinct entities of aneurysm disease can unravel core pathways.
Background
Serotonin (5-hydroxytryptamin, 5-HT) is an indolamine platelet agonist, biochemically derived from tryptophan. 5-HT is secreted from the enterochromaffin cells into the gastrointestinal tract and blood. Blood 5-HT has been proposed to regulate hemostasis by acting as a vasoconstrictor and by triggering platelet signaling through 5-HT receptor 2A (5HTR2A). Although platelets do not synthetize 5-HT, they take 5-HT up from the blood and store it in their dense granules which are secreted upon platelet activation.
Objective
To identify the molecular composite of the 5-HT uptake system in platelets and elucidate the role of platelet released 5-HT in thrombosis and ischemic stroke. Methods: 5-HT transporter knockout mice (5Htt\(^{-/-}\)) were analyzed in different in vitro and in vivo assays and in a model of ischemic stroke.
Results
In 5Htt\(^{-/-}\) platelets, 5-HT uptake from the blood was completely abolished and agonist-induced Ca2+ influx through store operated Ca\(^{2+}\) entry (SOCE), integrin activation, degranulation and aggregation responses to glycoprotein VI (GPVI) and C-type lectin-like receptor 2 (CLEC-2) were reduced. These observed in vitro defects in 5Htt\(^{-/-}\) platelets could be normalized by the addition of exogenous 5-HT. Moreover, reduced 5-HT levels in the plasma, an increased bleeding time and the formation of unstable thrombi were observed ex vivo under flow and in vivo in the abdominal aorta and carotid artery of 5Htt\(^{-/-}\) mice. Surprisingly, in the transient middle cerebral artery occlusion (tMCAO) model of ischemic stroke 5Htt\(^{-/-}\) mice showed nearly normal infarct volume and the neurological outcome was comparable to control mice.
Conclusion
Although secreted platelet 5-HT does not appear to play a crucial role in the development of reperfusion injury after stroke, it is essential to amplify the second phase of platelet activation through SOCE and plays an important role in thrombus stabilization.
The brain-derived neurotrophic factor BDNF plays a critical role in neuronal development and the induction of L-LTP at glutamatergic synapses in several brain regions. However, the cellular and molecular mechanisms underlying these BDNF effects have not been firmly established. Using in vitro cultures of cortical neurons from knockout mice for Pld1 and Rsk2, BDNF was observed to induce a rapid RSK2-dependent activation of PLD and to stimulate BDNF ERK1/2-CREB and mTor-S6K signalling pathways, but these effects were greatly reduced in Pld1\(^{-/-}\) neurons. Furthermore, phospho-CREB did not accumulate in the nucleus, whereas overexpression of PLD1 amplified the BDNF-dependent nuclear recruitment of phospho-ERK1/2 and phospho-CREB. This BDNF retrograde signalling was prevented in cells silenced for the scaffolding protein PEA15, a protein which complexes with PLD1, ERK1/2, and RSK2 after BDNF treatment. Finally PLD1, ERK1/2, and RSK2 partially colocalized on endosomal structures, suggesting that these proteins are part of the molecular module responsible for BDNF signalling in cortical neurons.
Ablation of BRaf Impairs Neuronal Differentiation in the Postnatal Hippocampus and Cerebellum
(2013)
This study focuses on the role of the kinase BRaf in postnatal brain development. Mice expressing truncated, non-functional BRaf in neural stem cell-derived brain tissue demonstrate alterations in the cerebellum, with decreased sizes and fuzzy borders of the glomeruli in the granule cell layer. In addition we observed reduced numbers and misplaced ectopic Purkinje cells that showed an altered structure of their dendritic arborizations in the hippocampus, while the overall cornus ammonis architecture appeared to be unchanged. In male mice lacking BRaf in the hippocampus the size of the granule cell layer was normal at postnatal day 12 (P12) but diminished at P21, as compared to control littermates. This defect was caused by a reduced ability of dentate gyrus progenitor cells to differentiate into NeuN positive granule cell neurons. In vitro cell culture of P0/P1 hippocampal cells revealed that BRaf deficient cells were impaired in their ability to form microtubule-associated protein 2 positive neurons. Together with the alterations in behaviour, such as autoaggression and loss of balance fitness, these observations indicate that in the absence of BRaf all neuronal cellular structures develop, but neuronal circuits in the cerebellum and hippocampus are partially disturbed besides impaired neuronal generation in both structures.
Background
Platelets are anuclear cell fragments derived from bone marrow megakaryocytes that safeguard vascular integrity, but may also cause pathological vessel occlusion. Reorganizations of the platelet cytoskeleton and agonist-induced intracellular Ca2+-mobilization are crucial for platelet hemostatic function. EF-hand domain containing 2 (EFhd2, Swiprosin-1) is a Ca2+-binding cytoskeletal adaptor protein involved in actin remodeling in different cell types, but its function in platelets is unknown.
Objective
Based on the described functions of EFhd2 in immune cells, we tested the hypothesis that EFhd2 is a crucial adaptor protein for platelet function acting as a regulator of Ca2+-mobilization and cytoskeletal rearrangements.
Methods and Results
We generated EFhd2-deficient mice and analyzed their platelets in vitro and in vivo. Efhd2-/- mice displayed normal platelet count and size, exhibited an unaltered in vivo life span and showed normal Ca2+-mobilization and activation/aggregation responses to classic agonists. Interestingly, upon stimulation of the immunoreceptor tyrosine-based activation motif-coupled receptor glycoprotein (GP) VI, Efhd2-/- platelets showed a slightly increased coagulant activity. Furthermore, absence of EFhd2 had no significant impact on integrin-mediated clot retraction, actomyosin rearrangements and spreading of activated platelets on fibrinogen. In vivo EFhd2-deficiency resulted in unaltered hemostatic function and unaffected arterial thrombus formation.
Conclusion
These results show that EFhd2 is not essential for platelet function in mice indicating that other cytoskeletal adaptors may functionally compensate its loss.