Refine
Has Fulltext
- yes (32)
Year of publication
- 2020 (32) (remove)
Document Type
- Doctoral Thesis (21)
- Complete part of issue (4)
- Journal article (3)
- Jahresbericht (1)
- Book (1)
- Book article / Book chapter (1)
- Working Paper (1)
Language
- English (17)
- German (14)
- Multiple languages (1)
Keywords
- Wuerzburg (4)
- Wurzburg (4)
- University (3)
- Universität (3)
- Würzburg (3)
- Borylierung (2)
- Afrika (1)
- Alkaloide (1)
- Aufmerksamkeit (1)
- Auslandsgeschäft (1)
Institute
- Fakultät für Biologie (4)
- Graduate School of Life Sciences (4)
- Institut für Anorganische Chemie (4)
- Theodor-Boveri-Institut für Biowissenschaften (4)
- Universität - Fakultätsübergreifend (3)
- Institut für deutsche Philologie (2)
- Rudolf-Virchow-Zentrum (2)
- Abteilung für Funktionswerkstoffe der Medizin und der Zahnheilkunde (1)
- Center for Computational and Theoretical Biology (1)
- Graduate School of Law, Economics, and Society (1)
Schriftenreihe
- Aventiuren; 13 (1)
Die Studie befasste sich mit den Veränderungen des oralen Mikrobioms bei Patienten, die mit einer herausnehmbaren oder festsitzenden kieferorthopädischen Apparatur behandelt wurden. Während des sechsmonatigen Studienzeitraums wurden 25 Probanden hinsichtlich Streptococcus mutans und Lactobacillus mit dem CRT bacteria Test der Firma Ivoclar Vivadent untersucht. Abgesehen davon wurde ihre gingivale Gesundheit mittels Approximalraum-Plaque Index nach Saxer und Mühlemann und Papillenblutungsindex nach Lange et. al. ermittelt.
„Versorgungssicherheit“ ist eines der Hauptanliegen und daher immense Triebkraft der Energiepolitik. Ein vitales Interesse an einer verlässlichen Versorgungslage hat gerade im Hinblick auf Energie nicht nur jeder Einzelne, der diese Ware tagtäglich konsumiert. Auch für Politik und Wirtschaft hat diese, mit Blick auf den Industriestandort Deutschland, Priorität.
Eine anerkannte juristische Definition von Versorgungssicherheit gibt es bislang indessen nicht. Es klafft eine Lücke zwischen praktischer Bedeutsamkeit und wissenschaftlicher Untersuchung. Die rechtsdogmatische Aufarbeitung ist allerdings denknotwendige Voraussetzung für jede weitere juristische Befassung mit dem Gegenstand der Versorgungssicherheit und ihm nahestehenden Rechtsfragen.
Nicht erst seit der Debatte um die Energiewende ist der Begriff in aller Munde und wird beinahe inflationär verwandt. Eine nähere wissenschaftliche Befassung mit dem rechtlichen Bedeutungsgehalt dieser Begrifflichkeit erscheint daher dringend geboten, findet sie sich doch in diversen Regelwerken als Leitprinzip und Tatbestandsmerkmal. Zur Auseinandersetzung mit der Substanz der Versorgungssicherheit als Rechtsbegriff leistet die vorliegende Arbeit einen Beitrag. „Versorgungssicherheit“ wird als Rechtsbegriff subsumierbar gemacht.
Zunächst geht die Arbeit auf Begriff und Gegenstand der Versorgungssicherheit ein. Es wird eine Abgrenzung nach außen, zu verwandten Termini und vermeintlichen Synonymen, vorgenommen. Darauf aufbauend wird der, der Versorgungssicherheit innewohnende, Bedeutungsgehalt und seine rechtlichen Konsequenzen untersucht. Es wird untersucht, ob und welche Rolle Versorgungssicherheit bei der Gesetzeserfüllung spielt. Insbesondere wird in diesem Zusammenhang beleuchtet, ob die behördliche Entscheidung durch ihren Deutungsinhalt determiniert ist. In materieller Hinsicht muss zu diesem Zweck der Versuch einer Definition unternommen werden. Versorgungssicherheit wird auf ihren kleinesten gemeinsamen Nenner gebracht werden. Die Frage, ob damit für die Rechtsanwendung ein Mehrwert gewonnen ist, der Begriff der Versorgungssicherheit als Zielvorgabe gar justiziabel ist, wird anschließend überprüft.
Aufbauend auf der abstrakten Befassung mit dem Rechtsbegriff, wird schließlich analysiert, wie der Untersuchungsgegenstand sektorspezifisch im Energierecht zu verstehen ist. Lassen sich die Ergebnisse, die abstrakt für wahr befunden wurden, anhand eines Rechtsgebietes, welches von „Versorgungssicherheit“ ganz besonders (mit)bestimmt wird, verifizieren und möglicherweise ausdifferenzieren? Ein energierechtlicher Abgleich und die normtextliche Rückanknüpfung dient gewissermaßen als Lackmusprobe für die formulierten Thesen.
Die Arbeit schließt mit einem Fazit und einem Ausblick auf die voraussichtliche Entwicklung des Untersuchungsgegenstandes.
Maintenance of tumor vasculature integrity is indispensable for tumor growth and thus affects tumor progression. Previous studies have identified platelets as major regulators of tumor vascular integrity, as their depletion selectively renders tumor vessels highly permeable, causing massive intratumoral hemorrhage. While these results establish platelets as potential targets for anti-tumor therapy, depletion is not a treatment option due to the essential role of platelets for hemostasis. This thesis demonstrates for the first time that functional inhibition of glycoprotein (GP) VI on the platelet surface rapidly induces tumor hemorrhage and diminishes tumor growth similar to complete platelet depletion but without inducing systemic bleeding complications. Both, the intratumoral bleeding and tumor growth arrest could be reverted by depletion of Ly6G+ cells confirming them to be responsible for the induction of bleeding and necrosis within the tumor. In addition, GPVI inhibition increased intra-tumoral accumulation of co-administered chemotherapeutic agents, thereby resulting in a profound anti-tumor effect. In summary, this thesis manifests platelet GPVI as a key regulator of vascular integrity specifically in growing tumors, serving as a potential basis for the development of anti-tumor strategies.
In the second part of this thesis, light is shed on the modulating role of bridging integrator 2 (BIN2) in platelet Ca2+ signaling. Stromal interaction molecule 1 (STIM1) mediated store-operated calcium entry (SOCE) is the major route of Ca2+ influx in platelets, triggered by inositol trisphosphate receptor (IP3R)-dependent Ca2+ store release. In this thesis, the BAR domain superfamily member BIN2 was identified as the first Ca2+ signaling modulator, interacting with both, STIM1 and IP3R in platelets. Deletion of BIN2 resulted in reduced Ca2+ store release and Ca2+ influx in response to all tested platelet agonists. These defects were a consequence of impaired IP3R function in combination with defective STIM1-mediated SOC channel activation, while Ca2+ store content and agonist-induced IP3 production were unaltered. These results establish BIN2 as a central regulator of platelet Ca2+ signaling.
The third part of this thesis focuses on the effect of the soluble neuronal guidance protein Sema7A on platelet function. Rosenberger et al. discovered that Sema7A cleavage from red blood cells increases the formation of platelet-neutrophil complexes, thereby reinforcing thrombo-inflammation in myocardial ischemia-reperfusion injury (MIRI). This thesis establishes soluble Sema7A as a stimulator of platelet thrombus formation via its interaction with platelet GPIbα, thereby reinforcing PNC formation. Thus, interfering with the GPIb-Sema7A interaction during MIRI represents a potential strategy to reduce cardiac damage and improve clinical outcome following MI.
The aim of the thesis was to develop water soluble poly(2-oxazoline) (POx) copolymers with new side group functionalities, which can be used for the formation of hydrogels in biomedical applications and for the development of peptide-polymer conjugates.
First, random copolymers of the monomer MeOx or EtOx with ButEnOx and EtOx with DecEnOx were synthesized and characterized. The vinyl functionality brought into the copolymer by the monomers ButEnOx and DecEnOx would later serve for post-polymerization functionalization. The synthesized copolymers were further functionalized with thiols via post-polymerization functionalization using a newly developed synthesis protocol or with a protected catechol molecule for hydrogel formation. For the formation of peptide-polymer conjugates, a cyclic thioester, namely thiolactone acrylamide and an azlactone precursor, whose synthesis was newly developed, were attached to the side chain of P(EtOx-co-ButEnOx) copolymers.
The application of the functionalized thiol copolymers as hydrogels using thiol-ene chemistry for cross-linking was demonstrated. The swelling behavior and mechanical properties were characterized. The hydrophilicity of the network as well as the cross-linking density strongly influenced the swelling behavior and the mechanical strength of the hydrogels. All hydrogels showed good cell viability results.
The hydrogel networks based on MeOx and EtOx were loaded with two dyes, fluorescein and methylene blue. It was observed that the uptake of the more hydrophilic dye fluorescein depended more on the ability of the hydrogel to swell. In contrast, the uptake of the more hydrophobic dye methylene blue was less dependent on the swelling degree, but much more on the hydrophilicity of the network.
For the potential application as cartilage glue, (biohybrid) hydrogels were synthesized based on the catechol-functionalized copolymers, with and without additional fibrinogen, using sodium periodate as the oxidizing agent. The system allowed for degradation due to the incorporated ester linkages at the cross-linking points. The swelling behavior as well as the mechanical properties were characterized. As expected, hydrogels with higher degrees of cross-linking showed less swelling and higher elastic modulus. The addition of fibrinogen however increased the elasticity of the network, which can be favorable for the intended application as a cartilage glue. Biological evaluation clearly demonstrated the advantage of degradable ester links in the hydrogel network, where chondrocytes were able to bridge the artificial gap in contrast to hydrogels without any ester motifs.
Lastly, different ways to form peptide-polymer conjugates were presented. Peptides were attached with the thiol of the terminal cysteine group to the vinyl side chain of P(EtOx-co-ButEnOx) copolymers by radical thiol-ene chemistry. Another approach was to use a cyclic thioester, thiolactone, or an azlactone functionality to bind a model peptide via native chemical ligation. The two latter named strategies to bind peptides to POx side chains are especially interesting as one and in the case of thiolactone two free thiols are still present at the binding site after the reaction, which can, for example, be used for further thiol-ene cross-linking to form POx hydrogels.
In summary, side functional poly(oxazoline) copolymers show great potential for numerous biomedical applications. The various side chain functionalities can be introduced by an appropriate monomer or by post-polymerization functionalization, as demonstrated. By their multi-functionality, hydrogel characteristics, such as cross-linking degree and mechanical strength, can be fine-tuned and adjusted depending on the application in the human body. In addition, the presented chemoselective and orthogonal reaction strategies can be used in the future to synthesize polymer conjugates, which can, for example, be used in drug delivery or in tissue regeneration.
Die Zeitschrift promptus – Würzburger Beiträge zur Romanistik erscheint einmal jährlich und wird durch den gemeinnützigen Verein promptus e.V. herausgegeben.
Sie richtet sich an alle Nachwuchswissenschaftler im Bereich der romanistischen Sprach- und Literaturwissenschaft sowie der Fachdidaktik und bietet diesen die Möglichkeit, in einem frühen Stadium ihrer akademischen Laufbahn qualitativ hochwertige Arbeiten zu publizieren. Zudem versteht sich die Zeitschrift als Impulsgeber für junge romanistische Forschung, ohne sich dabei thematisch zu beschränken.
Potential evolutionary responses to landscape heterogeneity and systematic environmental trends
(2020)
Over the course of the last century, humans have witnessed drastic levels of global environmental change that endangered both, the survival of single species as well as biodiversity itself. This includes climate change, in both environmental means and in variance and subsequently frequent extreme weather events, as well as land use change that species have to cope with.
With increasing urbanization, increasing agricultural area and increasing intensification, natural habitat is not only lost, but also changes its shape and distribution in the landscape. Both aspects can heavily influence an individual's fitness and therefore act as a selective force promoting evolutionary change.
This way climate change influences individuals' niches and dispersal. Local adaptation and dispersal are not independent of each other. Dispersal can have two opposite effects on local adaptation. It can oppose local adaptation, by promoting the immigration of maladapted indi-
viduals or favor local adaptation by introducing better adapted genotypes. Which of those effects of dispersal on local adaptation emerges in a population depends on the dispersal strategies and the spatial structure of the landscape. In principle an adaptive response can include adjustment of the niche optimum as well as habitat tolerance (niche width) or (instead) ecological tracking of adequate conditions by dispersal and range shifting. So
far, there has been no extensive modeling study of the evolution of the environmental niche optimum and tolerance along with dispersal probability in complex landscapes. Either only dispersal or (part of ) the environmental niche can evolve or the landscapes used are not realistic but rather a very abstract representation of spatial structures.
I want to try and disentangle those different effects of both local adaptation and dispersal during global change, as well as their interaction, especially considering the separation between the effects of increasing mean and increasing variance. For this, I implemented an individual based model (IBM), with escalating complexity.
I showed that both on a temporal as well as on a spatial scale, variation can be more influential then mean conditions.
Indeed, the actual spatial configuration of this heterogeneity and the relationship between spatial and temporal heterogeneity affect the evolution of the niche and of dispersal probability more than temporal or spatial mean conditions. I could show that in isolated populations, an increase of an environmental attribute's mean or variance can lead to extinction, under certain conditions. In particular, increasing variance cannot be tracked forever, since increasing tolerance has distinct limits of feasibility. Increasing mean conditions can also occur too fast to be tracked, especially from generalist individuals. When expanding the model to the metapopulation level without a temporal environmental trend, the degree of spatial vs.temporal heterogeneity influenced the evolution of random dispersal heavily. With increasing spatial heterogeneity, individuals from extreme and rare patches
evolve from being philopatric to dispersive, while individuals from average patches switch in the opposite direction.
With the last expansion to a different set of landscapes with varying degrees of edge density, I could show that edge effects are strong in pseudo-agricultural landscapes, while
in pseudo-natural habitats they were hardly found, regardless of emigration strategy. Sharp edges select against dispersal in the edge patches and could potentially further isolate populations in agricultural landscapes.
The work I present here can also be expanded further and I present several suggestions on what to do next. These expansions could help the realism of the model and eventually shed light on its bearing on ecological global change predictions. For example species distribution models or extinction risk models would be more precise, if they included both spatial and temporal variation. The current modeling practices might not be suffcient to
describe the possible outcomes of global change, because spatio-temporal heterogeneity and its influence on species' niches is too important to be ignored for longer.
Adding interactions to topological (non-)trivial free fermion systems can in general have four different effects: (i) In symmetry protected topological band insulators, the correlations may lead to the spontaneous breaking of some protecting symmetries by long-range order that gaps the topological boundary modes. (ii) In free fermion (semi-)metal, the interaction could vice versa also generate long-range order that in turn induces a topological mass term and thus generates non-trivial phases dynamically. (iii) Correlation might reduce the topological classification of free fermion systems by allowing adiabatic deformations between states of formerly distinct phases. (iv) Interaction can generate long-range entangled topological order in states such as quantum spin liquids or fractional quantum Hall states that cannot be represented by non-interacting systems. During the course of this thesis, we use numerically exact quantum Monte Carlo algorithms to study various model systems that (potentially) represent one of the four scenarios, respectively.
First, we investigate a two-dimensional $d_{xy}$-wave, spin-singlet superconductor, which is relevant for high-$T_c$ materials such as the cuprates. This model represents nodal topological superconductors and exhibits chiral flat-band edge states that are protected by time-reversal and translational invariance. We introduce the conventional Hubbard interaction along the edge in order to study their stability with respect to correlations and find ferromagnetic order in case of repulsive interaction as well as charge-density-wave order and/or additional $i$s-wave pairing for attractive couplings. A mean-field analysis that, for the first time, is formulated in terms of the Majorana edge modes suggests that any order has normal and superconducting contributions. For example, the ferromagnetic order appears in linear superposition with triplet pairing. This finding is well confirmed by the numerically exact quantum Monte Carlo investigation.
Second, we consider spinless electrons on a two-dimensional Lieb lattice that are subject to nearest-neighbor Coulomb repulsion. The low energy modes of the free fermion part constitute a spin-$1$ Dirac cone that might be gapped by several mass terms. One option breaks time-reversal symmetry and generates a topological Chern insulator, which mainly motivated this study. We employ two flavors of quantum Monte Carlo methods and find instead the formation of charge-density-wave order that breaks particle-hole symmetry. Additionally, due to sublattices of unequal size in Lieb lattices, this induces a finite chemical potential that drives the system away from half-filling. We argue that this mechanism potentially extends the range of solvable models with finite doping by coupling the Lieb lattice to the target system of interest.
Third, we construct a system with four layers of a topological insulators and interlayer correlation that respects one independent time-reversal and a unitary $\mathbb{Z}_2$ symmetry. Previous studies claim a reduced topological classification from $\mathbb{Z}$ to $\mathbb{Z}_4$, for example by gapping out degenerate zero modes in topological defects once the correlation term is designed properly. Our interaction is chosen according to this analysis such that there should exist an adiabatic deformation between states whose topological invariant differs by $\Delta w=\pm4$ in the free fermion classification. We use a projective quantum Monte Carlo algorithm to determine the ground-state phase diagram and find a symmetry breaking regime, in addition to the non-interacting semi-metal, that separates the free fermion insulators. Frustration reduces the size of the long-range ordered region until it is replaced by a first order phase transition. Within the investigated range of parameters, there is no adiabatic path deforming the formerly distinct free fermion states into each other. We conclude that the prescribed reduction rules, which often use the bulk-boundary correspondence, are necessary but not sufficient and require a more careful investigation.
Fourth, we study conduction electron on a honeycomb lattice that form a Dirac semi-metal Kondo coupled to spin-1/2 degrees of freedom on a Kagome lattice. The local moments are described by a variant of the Balents-Fisher-Girvin model that has been shown to host a ferromagnetic phase and a $\mathbb{Z}_2$ spin liquid at strong frustration. Here, we report the first numerical exact quantum Monte Carlo simulation of the Kondo-coupled system that does not exhibit the negative-sign problem. When the local moments form a ferromagnet, the Kondo coupling induces an anti-ferromagnetic mass term in the conduction-electron system. At large frustration, the Dirac cone remains massless and the spin system forms a $\mathbb{Z}_2$ spin liquid. Owing to the odd number of spins per unit cell, this constitutes a non-Fermi liquid that violates Luttinger's theorem which relates the Fermi volume to the particle density in a Fermi liquid. This phase is a specific realization of the so called 'fractional Fermi liquid` as it has been first introduced in the context of heavy fermion models.
This thesis reports on the applications of a particular N-heterocyclic silylene, Dipp2NHSi (1), as an ambiphilic reagent in main group chemistry and as a ligand in transition metal chemistry. One focus of the work lies in the evaluation of the differences in the reactivity of N-heterocyclic silylenes in main group element and transition metal chemistry in comparison with the in these areas nowadays ubiquitous N-heterocyclic carbenes. The first chapter gives an insight into the reactivity of Dipp2NHSi with respect to different types of main group element compounds. Silylene 1 was reacted with group 13 compounds. Adduct formation was observed with AlI3, Al(C6F5)3 and B(C6F5)3 which led to isolation of Dipp2NHSi·AlI3 (2), Dipp2NHSi·Al(C6F5)3 (3) and Dipp2NHSi·B(C6F5)3 (4). Furthermore, the reactivity of Dipp2NHSi (1) with respect to different elementhalide bonds was investigated. The reaction with elemental bromine and iodine leads to the dihalosilanes Dipp2NHSiBr2 (5) and Dipp2NHSiI2 (6). Utilizing methyl iodide, benzyl chloride and benzyl bromide, the insertion products Dipp2NHSi(I)(Me) (10), Dipp2NHSi(Cl)(benzyl) (11) and Dipp2NHSi(Br)(benzyl) (12) are obtained. Thus, insertion is preferred to reductive coupling with formation of RH2C–CH2R (R = H, Ph) and the corresponding dihalosilane. The reaction of 1 with Me3SnCl leads to the diazabutene {(Me3Sn)N(Dipp)CH}2 (9). The reaction of 1 with Ph2SnCl2 gives exclusively Dipp2NHSiCl2 (8) and cyclic polystannanes (Ph2Sn)n. The reactivity of 1 towards selected 1,3-dipolar compounds was also examined and Dipp2NHSi was reacted with azides of different size. The reaction with adamantyl azide led to the formation of the tetrazoline 13. For the reaction with the sterically less demanding trimethylsilyl azide the azido silane Dipp2NHSi(N(SiMe3)2)(N3) (14) and the degradation product 14* was isolated. The cyclosilamine 15 was formed from the reaction of 1 with 2,6-(diphenyl)phenyl azide. The bonding situation and ligation properties of Dipp2NHSi in transition metal complexes was assessed in the second part of the thesis by means of theoretical calculations and experimental investigations. Calculations on the main electronic features of Me2Im/Me2NHSi and Dipp2NHSi/Dipp2Im revealed significant differences in the frontier orbital region of these compounds, which affect the ligation properties of NHSis in general. It was demonstrated that NHSis show significantly different behaviour concerning their coordination chemistry. In particular, one energetically low lying π-acceptor orbital seems to determine the coordination chemistry of these ligands. To provide experimental support for these calculations, the silylene complexes [M(CO)5(Dipp2NHSi)] (M = Cr 16, Mo 17, W 18) were synthesized from Dipp2NHSi and [M(CO)6] (M = Cr, Mo, W) and the tungsten NHSi complex 18 was compared to the NHC complexes [W(CO)5(iPr2Im)] (19), [W(CO)5(iPr2ImMe)] (20) and [W(CO)5(Me2ImMe)] (21). The bonding of Me2Im and Me2NHSi (= L) to transition metal complexes has been assessed with DFT calculations for the model systems [Ni(L)], [Ni(CO)3(L)], and [W(CO)5(L)]. These studies revealed some common features in the difference between M–NHSi and M–NHC bonding which largely affect the bonding situation in transition metal complexes. NHSis show a propensity for bridging two metal atoms which was demonstrated on three different examples. Dipp2NHSi reacts with [Ni(CO)4] to form the dinuclear silylene-bridged complex [{Ni(CO)2(μ-Dipp2NHSi)}2] (22) upon CO elimination. The reduction of [Ni(η5-C5H5)2] with lithium naphthalenide in the presence of Dipp2NHSi yielded the NHSi-bridged Ni(I) dimer [{(η5 C5H5)Ni(µ-Dipp2NHSi)}2] (23). The dimeric half-sandwich complex [{(η5-C5H5)Fe(CO)2}2] led upon reaction with Dipp2NHSi to the formation of the dinuclear, NHSi-bridged complex [{(η5-C5H5)Fe(CO)}2(µ-CO)(µ-Dipp2NHSi)] (24). The insertion of Dipp2NHSi into metal halide bonds was investigated in a series of manganese complexes [Mn(CO)5(X)] (X = Cl, Br, I). The reaction of Dipp2NHSi with [Mn(CO)5(I)] led to substitution of two carbonyl ligands with Dipp2NHSi (1) to afford the tricarbonyl complex [Mn(CO)3(Dipp2NHSi)2(I)] (25). In 25, the iodide ligand is aligned in the {Mn(CO)3} plane, located between both NHSi silicon atoms. Treatment of [Mn(CO)5(Br)] with two equivalents of Dipp2NHSi afforded the complex [Mn(CO)3(Dipp2NHSi)2(Br)] (26), in which the bromide ligand is distorted towards one of the NHSi ligands. The reaction of the silylene ligand with [Mn(CO)5(Cl)] at room temperature afforded a mixture of two products, [Mn(CO)3(Dipp2NHSi)2(Cl)] (27*) and the insertion product [Mn(CO)4(Dipp2NHSi)(Dipp2NHSi-Cl)] (27). Complete transfer of a halide to the silylene was achieved for the reaction of Dipp2NHSi with [(η5-C5H5)Ni(PPh3)(Cl)] to yield [Ni(PPh3)(η5-C5H5)(Dipp2NHSi-Cl)] (28). Similarly, the reaction with [(η5-C5H5)Fe(CO)2(I)] led to the formation of [(η5 C5H5)Fe(CO)2(Dipp2NHSi-I)] (29).
The lipids phosphatidylserine (PtdSer) and phosphatidylethanolamine (PtdEth) are normally asymmetrically localized to the cytosolic face of membrane bilayers, but can both be externalized during diverse biological processes, including cell division, cell fusion, and cell death. Externalized lipids in the plasma membrane are recognized by lipid-binding proteins to regulate the clearance of cell corpses and other cell debris. However, it is unclear whether PtdSer and PtdEth contribute in similar or distinct ways to these processes. We discovered that disruption of the lipid flippases that maintain PtdSer or PtdEth asymmetry in the plasma membrane have opposite effects on phagocytosis in Caenorhabditis elegans embryos. Constitutive PtdSer externalization caused by disruption of the major PtdSer flippase TAT-1 led to increased phagocytosis of cell debris, sometimes leading to two cells engulfing the same debris. In contrast, PtdEth externalization caused by depletion of the major PtdEth flippase TAT-5 or its activator PAD-1 disrupted phagocytosis. These data suggest that PtdSer and PtdEth externalization have opposite effects on phagocytosis. Furthermore, externalizing PtdEth is associated with increased extracellular vesicle release, and we present evidence that the extent of extracellular vesicle accumulation correlates with the extent of phagocytic defects. Thus, a general loss of lipid asymmetry can have opposing impacts through different lipid subtypes simultaneously exerting disparate effects.
Trotz der offiziell erlangten Unabhängigkeit der ehemaligen französischen Kolonien im subsaharischen Afrika prägen verallgemeinernde und abwertende Sichtweisen auf dortige Bevölkerungsgruppen den französischsprachigen Diskurs. Im Rahmen dieses Beitrages sollen Texte von Victor Hugo, Georges Remi und der Partei En Marche!, welche während und nach der Kolonialisierung entstanden sind, anhand der Theorien von Michel Foucault, Valentin-Yves Mudimbe und Edward Said analysiert werden. Hierbei werden bis dato vorherrschende binäre Denkstrukturen offengelegt, die „den/die Europäer*in“ und „den/die Afrikaner*in" in kontrastierende Kategorien einteilen und somit (neo)koloniale Machtgefüge implizit und explizit befürworten.
Der zweite Teil des Beitrags beschäftigt sich mit der Aufgabe, den subtilen Einfluss des Kolonialismus auf Sichtweisen der Schüler*innen im Rahmen einer Unterrichtsreihe aufzuarbeiten und mögliche Vorurteile und Stereotypen über die subsaharisch-afrikanische Bevölkerung zu überwinden. Die Dimensionen des interkulturellen Lernens nach Michael Byram, die nach wie vor fester Bestandteil europäischer Curricula sind, sollen mit denen des Postkolonialismus vereint werden, um den zunehmenden Spaltungen in multiethnischen Gesellschaften aktiv und jugendgerecht entgegenzuwirken.
Der Beitrag untersucht, wie Gendervorstellungen, Geschlechtsidentitäten und Körperkonzepte in dem altfranzösischen Roman performativ konstruiert werden. Anknüpfend an die Gender- und Queertheorie Judith Butlers wird gezeigt, dass das vermeintlich natürliche Geschlecht der Protagonistin nicht essentialistisch, sondern als kulturelle Kategorie zu verstehen ist.
Intuitive Benutzung wird in dieser Arbeit definiert als das Ausmaß, mit dem ein Produkt mental effizient und effektiv genutzt wird, was mit einem starken metakognitiven Gefühl von Flüssigkeit einhergeht. Aktuelle Methoden verfügen nicht über eine ausreichend hohe zeitliche Anwendungseffizienz, um im Industrieprojekt 3D-GUIde effektiv zur Evaluation von Interaktionspatterns für 3D-Creation-Oriented-User-Interfaces (3D-CUIs) eingesetzt werden zu können. Diese Interaktionspatterns beschreiben strukturiert, wie 3D-CUIs als User Interfaces zur Erstellung von dreidimensionalen Inhalten gestaltet werden müssen, um intuitive Benutzung zu unterstützen. In dieser Arbeit werden daher zwei neue Evaluationsmethoden vorgeschlagen: 1) IntuiBeat-F als formative Evaluationsmethode und 2) IntuiBeat-S als summative Evaluationsmethode. Basierend auf Default-Interventionist-Theorien und bestehenden Definitionen intuitiver Benutzung werden die mentale Beanspruchung als zentrales objektives, das metakognitive Gefühl von Flüssigkeit als zentrales subjektives und die Effektivität als zentrales pragmatisches mit intuitiver Benutzung assoziiertes Merkmal identifiziert. Die Evaluation intuitiver Benutzung mithilfe von IntuiBeat-F und IntuiBeat-S ist vielversprechend, da es sich bei beiden Methoden um Inhibition basierende Rhythmuszweitaufgaben handelt und diese somit mentale Beanspruchung objektiv erfassen können. Das Potential beider Methoden wird im Hinblick auf vorherige Forschungsarbeiten zur zeitlich effizienten Evaluation von 3D-CUIs aus der Mensch-Computer-Interaktion und der Psychologie diskutiert. Aus dieser Diskussion werden empirische Forschungsfragen abgeleitet. Die erste Forschungsfrage untersucht die wissenschaftliche Güte von IntuiBeat-S. Im ersten, zweiten und dritten Experiment werden Paare von 3D-CUIs miteinander summativ verglichen (d.h. weniger vs. stärker intuitiv benutzbare User Interfaces). Dabei wird die wissenschaftliche Güte von IntuiBeat-S hinsichtlich der Hauptgütekriterien Objektivität, Reliabilität und Validität beurteilt. Die Ergebnisse zeigen, dass IntuiBeat-S eine hohe wissenschaftliche Güte bei der summativen Evaluation besitzt. Zudem macht es bei der Anwendung von IntuiBeat-S keinen Unterschied, ob der Rhythmus über die Ferse oder den Fußballen eingeben wird, und ob als Stichproben Studierende mit höherer oder geringerer Vorerfahrung bezüglich der Nutzung von 3D-CUIs verwendet werden. Die zweite Forschungsfrage untersucht die wissenschaftliche Güte von IntuiBeat-F. Im vierten, fünften, sechsten und siebten Experiment werden 3D-CUIs einzeln formativ evaluiert (d.h. entweder ein weniger oder stärker intuitiv benutzbares User Interface). Dabei wird die wissenschaftliche Güte von IntuiBeat-F hinsichtlich der Hauptgütekriterien Gründlichkeit, Gültigkeit und Zuverlässigkeit beurteilt. Die Ergebnisse zeigen, dass IntuiBeat-F eine hohe wissenschaftliche Güte bei der formativen Evaluation besitzt. Diese liegt bei strikter Anwendung der Methode (d.h. Berücksichtigung ausschließlich mit der Methode entdeckter Nutzungsprobleme) zwar höher, ist aber bei wenig strikter Anwendung der Methode (d.h. Berücksichtigung auch unabhängig von der Methode entdeckter Nutzungsprobleme) noch ausreichend hoch. Jedoch konnte erst die Entwicklung und Einführung einer zusätzlichen Analysesoftware im Zuge des sechsten und siebten Experiments die wissenschaftliche Güte von IntuiBeat-F hinsichtlich aller drei Hauptgütekriterien demonstrieren, da ohne deren Unterstützung IntuiBeat-F vom Evaluator nicht ausreichend gründlich angewendet wird. Die dritte Forschungsfrage untersucht, wie hoch die zeitliche Anwendungseffizienz beider Methoden als wichtiger Aspekt praktischer Güte im Vergleich zu bereits vorhandenen Evaluationsmethoden für intuitive Benutzung ist. Bezüglich der summativen Evaluation wird im zweiten Experiment eine höhere zeitliche Anwendungseffizienz von IntuiBeat-S im Vergleich zum aktuellen summativen Benchmark, der CHAI-Methode, sowohl bei der Evaluation von weniger als auch bei der von stärker intuitiv benutzbaren 3D-CUIs demonstriert. Auch bezüglich der formativen Evaluation konnten die Ergebnisse der letzten vier Experimente zeigen, dass die zeitliche Anwendungseffizienz von IntuiBeat-F im Vergleich zum aktuellen formativen Benchmark, dem Nutzertest mit retrospektivem Think-Aloud- Protokoll, sowohl bei der Evaluation von weniger als auch stärker intuitiv benutzbaren 3D-CUIs höher liegt. Dieser Unterschied bleibt bestehend, egal ob eine zusätzliche Analysesoftware vom Evaluator verwendet wird oder nicht. Als Ergebnis aller Experimente lässt sich feststellen, dass die wissenschaftliche Güte und die zeitliche Anwendungseffizienz beider Methoden zur Evaluation intuitiver Benutzung von 3D-CUIs mehr als zufriedenstellend beurteilt werden kann. Die Arbeit wird mit einer Diskussion des geleisteten Forschungsbeitrags geschlossen. Dabei werden Anregungen für künftige Forschung aus theoretischer (z.B. Berücksichtigung des Gefühls von Flüssigkeit bei der Evaluation), praktischer (z.B. Untersuchung der Anwendbarkeit beider Methoden in anderen Domänen) und methodischer (z.B. Beurteilung der praktischen Güte beider Methoden anhand anderer Kriterien) Perspektive gegeben.
How genomic and ecological traits shape island biodiversity - insights from individual-based models
(2020)
Life on oceanic islands provides a playground and comparably easy\-/studied basis
for the understanding of biodiversity in general. Island biota feature many
fascinating patterns: endemic species, species radiations and species with
peculiar trait syndromes. However, classic and current island biogeography
theory does not yet consider all the factors necessary to explain many of these
patterns. In response to this, there is currently a shift in island biogeography
research to systematically consider species traits and thus gain a more
functional perspective. Despite this recent development, a set of species
characteristics remains largely ignored in island biogeography, namely genomic
traits. Evidence suggests that genomic factors could explain many of the
speciation and adaptation patterns found in nature and thus may be highly
informative to explain the fascinating and iconic phenomena known for oceanic
islands, including species radiations and susceptibility to biotic invasions.
Unfortunately, the current lack of comprehensive meaningful data makes studying
these factors challenging. Even with paleontological data and space-for-time
rationales, data is bound to be incomplete due to the very environmental
processes taking place on oceanic islands, such as land slides and volcanism,
and lacks causal information due to the focus on correlative approaches. As
promising alternative, integrative mechanistic models can explicitly consider
essential underlying eco\-/evolutionary mechanisms. In fact, these models have
shown to be applicable to a variety of different systems and study questions.
In this thesis, I therefore examined present mechanistic island models to
identify how they might be used to address some of the current open questions in
island biodiversity research. Since none of the models simultaneously considered
speciation and adaptation at a genomic level, I developed a new genome- and
niche-explicit, individual-based model. I used this model to address three
different phenomena of island biodiversity: environmental variation, insular
species radiations and species invasions.
Using only a single model I could show that small-bodied species with flexible
genomes are successful under environmental variation, that a complex combination
of dispersal abilities, reproductive strategies and genomic traits affect the
occurrence of species radiations and that invasions are primarily driven by the
intensity of introductions and the trait characteristics of invasive
species. This highlights how the consideration of functional traits can promote
the understanding of some of the understudied phenomena in island biodiversity.
The results presented in this thesis exemplify the generality of integrative
models which are built on first principles. Thus, by applying such models to
various complex study questions, they are able to unveil multiple biodiversity
dynamics and patterns. The combination of several models such as the one I
developed to an eco\-/evolutionary model ensemble could further help to identify
fundamental eco\-/evolutionary principles. I conclude the thesis with an outlook
on how to use and extend my developed model to investigate geomorphological
dynamics in archipelagos and to allow dynamic genomes, which would further
increase the model's generality.
Merkel cell carcinoma (MCC) is a rare and aggressive skin cancer. In approximately 80% of cases, genomic integration of the Merkel cell polyomavirus (MCPyV) is observed and overexpression of the two MCPyV T antigens (TAgs) is regarded as the main oncogenic determinant of MCPyV-positive MCC cases. However, the nature of the cells from which MCC arises is unknown. Therefore, the goal of the present work was to determine the cell of origin of MCC.
First, we characterized MCC patients’ tumors and demonstrated a high similarity of MCPyV- negative MCC with extracutaneous neuroendocrine carcinoma while MCPyV-positive MCC differs from these two groups with respect to morphology, immunohistochemical profile, genetics, origin and behavior. Based on the analysis of a trichoblastoma/MCC combined tumor, we demonstrated that a MCPyV-positive MCC can arise following MCPyV integration in an epithelial cell. In addition, the high similarity between trichoblastoma cells and Merkel cell (MC) progenitors of the hair follicle suggests that these hair follicle cells may represent a general start point for the development of MCPyV-positive MCC. A contribution of the viral TAgs to the development of the characteristic Merkel cell-like MCC phenotype is suggested by experiments demonstrating induction of Merkel cell markers upon TAg expression in human primary keratinocytes or hair follicle cells. As potential mechanisms mediating these phenotypic changes, we identified the capability of MCPyV LT to repress degradation of master regulator of MC development, i.e. the transcription factor ATOH1.
To conclude, our work suggests that MCPyV integration in epithelial cells of the hair follicle may represent an important path for MCC development.
Ziel der Arbeit war es die Quellenlage Hildegard von Bingens ‚Physica‘ zu beleuchten. Dazu werden die Kapitel der exotischen Gewürze (Kap. I,13-21 und I,26-27), der Duftpflanzen (Kap. I,22-25), und der heimischen Gewürze (Kap. I,63-70) mit den entsprechenden Kapiteln aus ‚Macer floridus‘ (Odo Magdunensis), ‚Circa instans‘ (Matthaeus Platearius), ‚Liber graduum‘ (Constantinus Africanus), ‚Naturalis historia‘ (Plinius der Ältere) und ‚Materia medica‘ (Pedanius Dioskurides) verglichen. Es konnten verschiedenartige Bezüge zur Tradition hergestellt werden, jedoch ist hervorzuheben, dass Hildegard dennoch in den Anwendungen eine ausgeprägte Originalität aufweist.
Fahrzeughersteller haben die Verfügbarkeit sogenannter hochautomatisierter Fahrfunktionen (SAE Level 3; SAE, 2018) in ihren Modellen angekündigt. Hierdurch wird der Fahrer in der Lage sein, sich permanent von der Fahraufgabe abzuwenden und fahrfremden Tätigkeiten nachzugehen. Allerdings muss er immer noch als Rückfallebene zur Verfügung stehen, um im Fall von Systemgrenzen oder -fehlern (siehe Gold, Naujoks, Radlmayr, Bellem & Jarosch, 2017), die Fahrzeugkontrolle zu übernehmen. Das Übernahmeerfordernis wird dem Fahrer durch die Ausgabe einer Übernameaufforderung vermittelt. Die Übernahme der manuellen Fahrzeugführung aus dem hochautomatisierten Fahren stellt aus psychologischer Sicht einen Aufgabenwechsel dar. Bei der Untersuchung von Aufgabenwechseln im Bereich der kognitiven und angewandten Psychologie zeigte sich vielfach, dass Aufgabenwechsel mit verlängerten Reaktionszeiten und erhöhten Fehlerraten assoziiert sind. Für den Anwendungsfall des automatisierten Fahrens liegen ebenfalls eine Reihe empirischer Studien vor, die darauf hinweisen, dass der Wechsel zum manuellen Fahren mit einer Verschlechterung der Fahrleistung gegenüber dem manuellen Fahren verbunden ist. Da Erkenntnisse vorliegen, dass eine Vorbereitung auf den Aufgabenwechsel die zu erwartenden Kosten verringern kann, ist das Ziel dieser Arbeit die Konzeption und empirische Evaluation einer Mensch-Maschine-Schnittstelle, die Nutzer hochautomatisierter Fahrzeuge durch frühzeitige Vorinformationen über Systemgrenzen auf die Kontrollübernahme vorbereitet.
Drei Experimente im Fahrsimulator mit Bewegungssystem betrachteten jeweils unterschiedliche Aspekte frühzeitiger Vorinformationen über bevorstehende Übernahmen. Das erste Experiment untersuchte, ob Fahrer überhaupt von frühzeitigen Situationsankündigungen, beispielsweise im Sinne einer verbesserten Übernahmeleistung, profitieren. Das zweite Experiment befasste sich mit der Frage, wie solche Ankündigungen zeitlich und inhaltlich zu gestalten sind (d. h. wann sie präsentiert werden und welche Informationen sie enthalten sollten), und welchen Einfluss deren Gestaltung auf die Aufgabenbearbeitung (insbesondere deren Unterbrechung und spätere Wiederaufnahme) während der automatisierten Fahrt hat. Um herauszufinden, wie ein Anzeigekonzept zur längerfristigen Planung von fahrfremden Tätigkeiten während des automatisierten Fahrens beitragen könnte, fand im dritten Experiment ein Vergleich von Situationsankündigungen, die vor dem Erreichen einer Übernahmesituation ausgegeben wurden, mit kontinuierlich präsentierten Informationen über die verbleibende Distanz zur nächsten Systemgrenze statt. In allen Studien wurde neben den Auswirkungen frühzeitiger Vorinformationen auf die Übernahmeleistung und Bearbeitung von fahrfremden Tätigkeiten auch untersucht, welche Auswirkungen ein erweitertes Übernahmekonzept auf die Fahrerreaktion in Grenz- und Fehlerfällen, in denen Vorinformationen entweder nicht oder fehlerhaft angezeigt wurden, hat.
Für die Gestaltung zukünftiger Übernahmekonzepte für hochautomatisierte Fahrzeuge kann basierend auf den Ergebnissen empfohlen werden, frühzeitige Anzeigen von Systemgrenzen zur Ermöglichung eines sicheren und komfortablen Wechsels zwischen dem manuellen und dem automatisierten Fahren in die Mensch-Maschine-Schnittstelle zu integrieren. Basierend auf den Ergebnissen dieser Arbeit liegt der empfohlene Zeitpunkt für diskrete Ankündigungen bei einer Reisegeschwindigkeit von 120 km/h bei etwa 1000 Meter (d. h. ca. 30 Sekunden) vor der Ausgabe der Übernahmeaufforderung. Zudem wird empfohlen zur Abschätzung der verbleibenden Zeit im automatisierten Modus eine Anzeige der Entfernung zur nächsten Systemgrenze in das Konzept zu integrieren, die dem Fahrer eine längerfristige Aufgabenplanung ermöglicht. Neben der reinen Anzeige des Übernahmeerfordernisses sollten dem Fahrer auch Informationen über das erforderliche Fahrmanöver nach der Kontrollübernahme übermittelt werden.
Cuticular hydrocarbons (CHC) abound on the surface of arthropods. In spite of their simple structure (molecules of carbon and hydrogen atoms), they provide pivotal functions in insects: their hydrophobic properties confer the insects a means to regulate water balance and avoid desiccation, whereas their diversity has enhanced their use as signals and cues in a wide range of communication and recognition processes. Although the study of CHC in insects over the past two decades has provided great insight into the wide range of functions they play, there is still a gap in understanding how they diversify and evolve. In this thesis, I have used members of the family Chrysididae to explore patterns of diversification of CHC. Most of the species of cuckoo wasps in this study are specialized parasitoids or kleptoparasites of mainly solitary hymenopteran hosts. Other hosts of the family include butterflies or stick insects. Cuckoo wasps are a particular interesting model to study the evolution of cuticular hydrocarbons because of their chemical adaptations that allow them to remain unrecognized by their hosts. Chemical insignificance (the reduction of the total amount of CHC on the cuticle) and chemical mimicry (the de novo production of CHC profiles resembling those of their female host) have been described in some representatives of the family and unpublished evidence suggests chemical deception is widespread in Chrysididae (Chapter 2). Nonetheless, to trace the evolution of any trait of interest, a reliable phylogenetic reconstruction of the family is required. Therefore, the first study of this thesis constitutes the largest and to-date most reliable phylogenetic reconstruction of the family Chrysididae, which includes representatives of 186 species of cuckoo wasps. While the results of this phylogenetic reconstruction are consistent with previous ideas on the relationships of subfamilies and tribes, it shows the existence of several non-monophyletic genera (Chapter 3). CHC are involved in intraspecific recognition, often acting as contact sex pheromones. Nevertheless, it is not yet understood to what extent CHC profiles differ between the two sexes and whether some compound classes are more prevalent in one or the other sex. So far, no comparison of CHC profiles of males and females has been done for more than a dozen of related species. In Chapter 4, I describe and compare CHC profiles of females and males of 58 species of cuckoo wasps in order to evaluate whether and to what extent CHC profiles of these species differ between the sexes. I demonstrated that CHC profiles of cuckoo wasps are frequently (more than 90% of the species analyzed) and strongly dimorphic (both sexes of a given species tend to produce very different CHC compounds). Methyl-branched compounds tend to be more prevalent in males (especially dimethyl-branched compounds) and unsaturated compounds prevail in females. Moreover, a sex-specific pattern in the distribution of the double bond position of alkenes was evident: internal double bond positions (> 11) occur predominantly in males, whereas alkenes with the doublé bond at position 9 were more abundant and frequent in females (Chapter4). In Chapter5, I investigated how CHC profiles of cuckoo wasps differ across species. Are CHC profiles of cuckoo wasps species-specific, enabling their use as cues for species recognition? How do CHC profiles resemble phylogenetic relatedness? In Chapter 5, I try to answer these questions by comparing CHC profiles of 59 species of cuckoo wasps. CHC profiles of cuckoo wasps are shown to be species (and sex-) specific. I show that CHC profiles are useful as a complementary tool to help delimiting taxonomically difficult sibling species. Moreover, the evaluation of CHC profiles of five commonly occurring species within a genus, showed little or no geographical variation. However, CHC profiles of closely related species may differ strongly among each other, not being useful to track the evolutionary history of species (Chapter 5). Sexual selection is generally credited for generating striking sexual dimorphism by causing changes in male traits. Most often, sexual selection has a stronger effect on males, who compete for access to and may be selected by females, thus male traits may rapidly evolve. Nevertheless, in cuckoo wasps, it appears that it is the female sex the one evolving faster changes, with females of very closely related species showing extremely divergent profiles. One plausible reason for this disparity is that natural selection acting on female’s CHC profiles may be stronger than sexual selection on males (Chapter 6). Since females of cuckoo wasps are most probably engaged in an evolutionary arms race with their female hosts, CHC profiles of female cuckoo wasps are likely rapidly evolving, thus explaining part of the strong observed sexual dimorphism of CHC (Chapter 6). In fact, Chapter 7 shows evidence of a possible ongoing evolutionary arms race between five cuckoo wasps of the genus Hedychrum and their hosts. Hedychrum species parasitize either Coleoptera-hunting or Hymenoptera-hunting digger wasps. Since the coleopteran prey of the former digger wasps is naturally better protected against fungus infestation, these wasps do not embalm their prey with alkene-enriched secretions as do the Hymenoptera-hunting digger wasps. Thus, Coleoptera-hunting digger wasps can apparently diversify their profiles to escape chemical mimicry. Interestingly, only female cuckoo wasps of these hosts have started producing the same compound classes and even the same CHC compounds as those of their hosts. Male cuckoo wasps, however retain an alkene-enriched CHC profile that reflects the molecular phylogeny of the genus (Chapter 7). Whereas, a larger number of parasite-host comparisons may be needed to further conclude that an arms race between cuckoo wasps and their hosts is capable of generating sexual dimorphism of cuckoo wasps, this thesis constitutes the first effort towards this, providing a starting point for further studies. Finally, I provide some methodological tools that may help in speeding up the sometimes cumbersome process of analyzing and identifying CHC profiles. One of the most time-demanding steps in the processing of CHC data is the alignment of CHC chromatograms. This process is often done manually, because alignment programs are mostly designed for metabolomics or are just recently being developed. I analyzed CHC profiles using a combined approach with two freely available programs. I used AMDIS (Automated Mass Spectral Deconvolution and Identification System, http://chemdata.nist.gov/mass-spc/amdis/) to deconvolute and automatically identify all CHC of interest present in a chromatogram. I then developed a series of R scripts to correct for potential, unavoidable errors while processing CHC chromatograms with AMDIS. Chapter 8 explains this procedure. In the next chapter, I developed a program that helps in the identification of one commonly occurring class of hydrocarbons. The limited number of linear alkanes (only one per carbon atom) and their characteristic diagnostic ion allows a rapid and unambigous identification of these substances. In opposition, unsaturated and methyl-branched compounds are more difficult to identify, as a result of the much larger diversity of existing compounds. To identify unsaturated compounds a derivatization is necessary to determine the position of the double bond. Methyl-branched alkanes, however can be identified from the original chromatogram if their diagnostic ions are known. Nonetheless, polymethyl-branched alkanes (e.g., compounds with two or more methyl groups along the chain) are often difficult to identify, because they may appear in mixes (e.g., 3,7 diMeC27 and 3,9 diMeC27), and tables containing the diagnostic ions are not easily available. Therefore, I developed a program that creates a table with all possiblemethyl-branched compounds containing up to 4 methyl groups, and that provides their diagnostic ions and a calculated retention index. This may allow a much faster identification of the methyl-branched compound a researcher is dealing with, without having to lose time in the tedious calculations by hand. The program is able to correctly identify, or at least, greatly reduce the number of possible options for the identification of an unknown methyl-branched compound. Thus, using this tool, most methyl-branched compounds can be readily identified (Chapter 9). This thesis ends with a general discussion (Chapter 10). Overall, this work provides a comprehensive overview of the diversity of cuticular hydrocarbons of cuckoo wasps. The analyses presented here shed light on the emergence and evolution of interspecific diversity and intraspecific sexual dimorphism of CHC profiles. In addition, two technical methods have been developed that could greatly facilitate the CHC analysis of insects.
Trotz der rasanten Entwicklung molekulargenetischer Analysemethoden sind die Auslöser vieler Erbrankheiten bislang ungeklärt. Eine Identifikation der genetischen Ursache einer Erkrankung ist jedoch essenziell, um zusätzliche invasive Tests vermeiden, adäquate Therapiemaßnahmen in die Wege leiten, akkurate Prognosen stellen und eine entsprechende genetische Beratung anbieten zu können. Next Generation Sequencing (NGS)-basierte Techniken wie die Whole Exome Sequenzierung (WES) haben die humangenetische Forschung und Diagnostik in den letzten Jahren revolutioniert. Die WES ermöglicht die Sequenzierung der Exons aller proteincodierenden Gene von mehreren Individuen gleichzeitig und stellt ein hilfreiches Werkzeug bei der Suche nach neuen kranheitsrelevanten Genen im Menschen dar.
Die vorliegende Arbeit beschäftigt sich mit der Aufklärung genetischer Ursachen verschiedenster Erkrankungen in konsanguinen Familien aus dem nahen und mittleren Osten mittels WES. Insgesamt wurden 43 Patienten mit unterschiedlichen Krankheitsbildern untersucht, darunter viele mit Skelettdysplasien oder Neuropathien. In 22 Fällen (51%) konnte die entsprechende krankheitsverursachende Mutation ausfindig gemacht werden. In 21% der aufgeklärten Fälle wurden Sequenzvarianten detektiert, die in der Literatur bereits als pathogen beschrieben wurden, während 63% bisher noch unbekannte Mutationen in bereits als krankheitsrelevant beschriebenen Genen darstellten. Zudem konnten im Rahmen dieser Arbeit drei neue, für den Menschen krankheitsrelevante Gene identifiziert werden, solute carrier family 10 member 7 (SLC10A7), T-box 4 (TBX4) und MIA SH3 domain ER export factor 3 (MIA3). SLC10A7 codiert für einen Transporter aus der Familie der solute carrier, der in der Plasmamembran verankert ist. In dieser Arbeit geleistete Analyseergebnisse konnten zu der Erstbeschreibung von homozygoten pathogenen SLC10A7-Mutationen als Ursache für eine Skelettdysplasie mit Amelogenesis imperfecta beitragen. Bei TBX4 handelt es sich um einen hochkonservierten Transkriptionsfaktor, der während der embryonalen Entwicklung an der Ausbildung der unteren Extremitäten beteiligt ist. Homozygote pathogene TBX4-Mutationen wurden im Kontext dieser Arbeit erstmalig mit einer posterioren Amelie mit Becken- und Lungenhypoplasie in Verbindung gebracht. MIA3 ist ein Transmembranprotein des endoplasmatischen Retikulums, das eine essenzielle Rolle bei der Proteinsekretion spielt. Die hier vorgestellten Patienten mit homozygoten pathogenen MIA3-Mutationen zeigen eine komplexe syndromale Erkrankung, die sich hauptsächlich in einer Kollagenopathie, Diabetes mellitus und milder mentaler Retardierung manifestiert und ein neues Krankheitsbild darstellt.
Die im Rahmen dieser Arbeit erzielten Ergebnisse erweitern somit zum einen das Mutationsspektrum verschiedener bekannter Krankheitsbilder und offenbaren zum anderen neue krankheitsrelevante Gene im Menschen.
Endophytes live in partial symbiosis inside a plant and have been detected in all tested plants. They belong to the group of fungi or bacteria and their ecological function is mostly unknown. The fungal endophytes of the genus Epichloë belong to a special group of endophytes. Epichloë endophytes live symbiotically inside cool season grass species and some of them are able to produce alkaloids toxic to vertebrates and insects. Their symbiosis is seen as mutualistic for the following reasons: the fungus provides the plant herbivore resistance by producing alkaloids, and it increases the plant’s drought tolerance as well as its biomass production. In return, the grass provides the fungus shelter, nutrients and dispersal. Epichloë endophytes are host specific and the ability to produce alkaloids differs between species. In order to estimate intoxication risks in grasslands, it is necessary to detect infection rates of different grass species with Epichloë endophytes, and to determine the genotypes and chemotypes of the Epichloë species as well as the produced alkaloid concentrations. Factors like land-use intensity or season may have an influence on infection rates and alkaloid concentrations. Also, different methodological approaches may lead to different results. In this doctoral thesis my general aim was to evaluate intoxication risks in German grasslands caused by Epichloë endophytes. For that I investigated infection rates of different grass species and the genotypes and chemotypes of their Epichloë endophytes in German grasslands (Chapter II). Furthermore, I compared alkaloid concentrations detected with dry and fresh plant weight and different analytical methods. I also detected possible changes on the influence of season or land-use intensity (Chapter III). Additionally, I examined infections with Epichloë endophytes and alkaloid concentrations in commercially available grass seed mixtures and determined how that influences the intoxication risk of grazing animals in Europe (Chapter IV).
It is of agricultural interest to estimate intoxication risks for grazing livestock on German grasslands due to Epichloë infected grass species. Therefore, it is important to investigate which grasses are infected with the Epichloë endophyte, if the endophytes have the ability to produce vertebrate and invertebrate toxic alkaloids and if the alkaloids are indeed produced. I showed that Epichloë festucae var. lolii infecting agriculturally important Lolium perenne lacked the starting gene for ergovaline biosynthesis. Hence, vertebrate toxic ergovaline was not detected in the majority of the collected L. perenne plants. The detection of alkaloid concentrations is an important tool to estimate intoxication risk for vertebrates, but also invertebrates. My studies showed that the usage of dry plant material is crucial to quantify the correct alkaloid concentrations, and that alkaloid concentrations can vary depending on the detection method. Hence, the usage of validated, similar detection methods is important to be able to compare alkaloid concentrations from different studies. Nevertheless, the trends of seasonal changes and the influence of land-use intensity stayed the same, regardless if dry or fresh plant weight was used. Also, alkaloid concentrations were below toxicity thresholds on population level, regardless of the method used. Two commercially available forage grass and two commercially available turf grass seed mixtures were infected with Epichloë endopyhtes and alkaloids were detected. This might contribute to the spreading of Epichloë endopyhtes in Germany, therefore seed mixtures should be tested for Epichloë infections. My results indicate that the intoxication risk is generally low in Germany at the moment, although that might change due to climate change, an increase of monocultural land-use, or the seeding of Epichloë infected grass seeds.
Über 30 Jahre Rechtsprechung durch den EuGH haben die Systeme der Besteuerung am Binnenmarkt nachhaltig geprägt. Während sich die Mitgliedstaaten bei der Errichtung ihrer Steuersysteme jedoch zumeist positiv definierter Prinzipien bedienen, basiert die Rechtsprechung des Gerichtshofs in weiten Teilen auf den prohibitiv formulierten Grundverkehrsfreiheiten. In Abwesenheit einer sekundärrechtlichen Harmonisierungslösung forcierte der Gerichtshof in den vergangenen Jahren zunehmend den Integrationsprozess im direkten Steuerrecht. Insbesondere in der jüngeren Vergangenheit fühlten sich die Mitgliedstaaten hierdurch zunehmend in ihren Souveränitätsrechten verletzt. Vorliegende Abhandlung gibt eine Antwort auf die Fragestellung, ob und wie eine unionsrechtskonforme und gleichzeitig ökonomisch-systematische Ausgestaltung der europäischen Steuerrechtsordnungen durch den EuGH noch möglich ist.
Pyrene is a polycyclic aromatic hydrocarbon (PAH) that has very interesting photophysical properties which make it suitable for a broad range of applications. The 2,7-positions of pyrene are situated on nodal planes in both the HOMO and LUMO. Hence, electrophilic reactions take place at the 1-, 3-, 6-, and 8-positions. The goal of this project was to develop novel pyrene derivatives substituted at the 2- and 2,7-positions, with very strong donors or/and acceptors, to achieve unprecedented properties and to provide a deeper understanding of how to control the excited states and redox properties. For that reason, a julolidine-type moiety was chosen as a very strong donor, giving D-π and D-π-D systems and, with Bmes2 as a very strong acceptor, D-π-A system. These compounds exhibit unusual photophysical properties such as emission in the green region of the electromagnetic spectrum in hexane, whereas all other previously reported pyrene derivatives substituted at the 2,7-positions show blue luminescence. Furthermore, spectroelectrochemical measurements suggest very strong coupling between the substituents at the 2,7-positions of pyrene in the D-π-D system. Theoretical studies show that these properties result from the very strong julolidine-type donor and Bmes2 acceptor coupling efficiently to the pyrene HOMO-1 and LUMO+1, respectively. Destabilization of the former and stabilization of the latter lead to an orbital shuffle between HOMO and HOMO 1, and LUMO and LUMO+1 of pyrene. Consequently, the S1 state changes its nature sufficiently enough to gain higher oscillator strength, and the photophysical and electrochemical properties are then greatly influenced by the substituents.
In another project, further derivatives were synthesized with additional acceptor moieties at the K-region of pyrene. These target derivatives exhibit strong bathochromically shifted absorption maxima (519-658 nm), which is a result of the outstanding charge transfer character introduced into the D-π-D pyrene system through the additional acceptor moiety at the K-region. Moreover, emission in the red to NIR region with an emission maximum at 700 nm in CH2Cl2 is detected. The excited state lives unusual long for K-region substituted pyrenes; however, such a lifetime is rather typical for 2,7-substituted pyrene derivatives.
The polycyclic aromatic hydrocarbon perylene, especially perylene diimide, has received considerable attention in recent years and has found use in numerous applications such as dyes, pigments and semiconductors. Nevertheless, it is of fundamental importance to understand how to modulate the electronic and photophysical properties of perylene depending on the specific desired application. Perylenes without carboxyimide groups at the peri positions are much less well studied due to the difficulties in functionalizing the perylene core directly. In particular, only ortho heteroatom substituted perylenes have not been reported thus far (exception: (Bpin)4-Per was already reported by Marder and co-workers). Thus, the effect of substituents on the ortho positions of the perylene core has not been investigated.
Two perylene derivatives were synthesized that bear four strong diphenylamine donor or strong Bmes2 acceptor moieties at the ortho positions. These compounds represent the first examples of perylenes substituted only at the ortho positions with donors or acceptors.
The investigations show that the photophysical and electronic properties of these derivatives are unique and different compared to the well-studied perylene diimides. Thus, up to four reversible reductions or oxidations are possible, which is unprecedented for monomeric perylenes. Furthermore, the photophysical properties of these two ortho-substituted derivatives are unusual compared to reported perylenes on many regards. Thus, large Stokes shifts are obtained, and the singlet excited state of these derivatives lives remarkably long with intrinsic lifetimes of up to 94 ns.
In a cooperation with Dr. Gerard P. McGlacken at University College Cork in Ireland, different quinolones were borylated using an iridium catalyst system to study the electronic and steric effect of the substrates. It was possible to demonstrate that the Ir-catalyzed borylation with the dtbpy ligand allows the direct borylation of various 4-quinolones at the 6- and 7-positions. Thus, later stage functionalization is possible with this method and more highly functionalized quinolones are also compatible with this mild reaction conditions.
Humans in our environment are of special importance to us. Even if our minds are
fixated on tasks unrelated to their presence, our attention will likely be drawn
towards other people’s appearances and their actions.
While we might remain unaware of this attentional bias at times, various studies have demonstrated the preferred visual scanning of other humans by recording eye movements in laboratory settings. The present thesis aims to investigate the circumstances under and the mechanisms by which this so-called social attention operates.
The first study demonstrates that social features in complex naturalistic scenes are prioritized in an automatic fashion. After 200 milliseconds of stimulus presentation, which is too brief for top-down processing to intervene, participants targeted image areas depicting humans significantly more often than would be expected from a chance distribution of saccades. Additionally, saccades towards these areas occurred earlier in time than saccades towards non-social image regions. In the second study, we show that human features receive most fixations even when bottom-up information is restricted; that is, even when only the fixated region was visible and the remaining parts of the image masked, participants still fixated on social image regions longer than on regions without social cues. The third study compares the influence of real and artificial faces on gaze patterns during the observation of dynamic naturalistic videos. Here we find that artificial faces, belonging to humanlike statues or machines, significantly predicted gaze allocation but to a lesser extent than real faces. In the fourth study, we employed functional magnetic resonance imaging to investigate the neural correlates of reflexive social attention. Analyses of the evoked blood-oxygenation level dependent responses pointed to an involvement of striate and extrastriate visual cortices in the encoding of social feature space.
Collectively, these studies help to elucidate under which circumstances social
features are prioritized in a laboratory setting and how this prioritization might be achieved on a neuronal level. The final experimental chapter addresses the question whether these laboratory findings can be generalized to the real world. In this study, participants were introduced to a waiting room scenario in which they interacted with a confederate. Eye movement analyses revealed that gaze behavior heavily depended on the social context and were influenced by whether an interaction is currently desired. We further did not find any evidence for altered gaze behavior in socially anxious participants. Alleged gaze avoidance or hypervigilance in social
anxiety might thus represent a laboratory phenomenon that occurs only under very specific real-life conditions. Altogether the experiments described in the present
thesis thus refine our understanding of social attention and simultaneously
challenge the inferences we can draw from laboratory research.
Fluorinated compounds are an important motif, particularly in pharmaceuticals, as one-third of the top performing drugs have fluorine in their structures. Fluorinated biaryls also have numerous applications in areas such as material science, agriculture, crystal engineering, supramolecular chemistry, etc. Thus, the development of new synthetic routes to fluorinated chemical compounds is an important area of current research. One promising method is the borylation of suitable precursors to generate fluorinated aryl boronates as versatile building blocks for organic synthesis.
Chapter 1
In this chapter, the latest developments in the synthesis, stability issues, and applications of fluorinated aryl boronates in organic synthesis are reviewed. The catalytic synthesis of fluorinated aryl boronates using different methods, such as C–H, C–F, and C–X (X = Cl, Br, I, OTf) borylations are discussed. Further studies covering instability issues of the fluorinated boronate derivatives, which are accelerated by ortho-fluorine, have been reported, and the applications of these substrates, therefore, need special treatment.
Numerous groups have reported methods to employ highly fluorinated aryl boronates that anticipate the protodeboronation issue; thus, polyfluorinated aryl boronates, especially those containing ortho-fluorine substituents, can be converted into chloride, bromide, iodide, phenol, carboxylic acid, nitro, cyano, methyl esters, and aldehyde analogues. These substrates can be applied in many cross-coupling reactions, such as the Suzuki-Miyaura reaction with aryl halides, the Chan-Evans-Lam C–N reaction with aryl amines or nitrosoarenes, C–C(O) reactions with N-(aryl-carbonyloxy)phthalamides or thiol esters (Liebskind-Srogl cross-coupling), and oxidative coupling reactions with terminal alkynes. Furthermore, the difficult reductive elimination from the highly stable complex [PdL2(2,6-C6F2+nH3-n)2] was the next challenge to be targeted in the homocoupling of 2,6-di-fluoro aryl pinacol boronates, and it has been solved by conducting the reaction in arene solvents that reduce the energy barrier in this step as long as no coordinating solvent or ancillary ligand is employed.
Chapter 2
In this chapter, phenanthroline-ligated copper complexes proved to be efficient catalysts for the Suzuki-Miyaura cross-coupling of highly fluorinated aryl boronate esters (ArF–Bpin) with aryl iodides or bromides. This newly developed method is an attractive alternative to the traditional methods as copper is an Earth-abundant metal, less toxic, and cheaper compared to the traditional methods which commonly required palladium catalysts, and silver oxide that is also often required in stoichiometric amounts. A combination of 10 mol% copper iodide and 10 mol% phenanthroline, with CsF as a base, in DMF, at 130 ˚C, for 18 hours is efficient to cross-couple fluorinated aryl pinacol boronates with aryl iodides to generate cross-coupled products in good to excellent yields. This method is also viable for polyfluorophenyl borate salts such as pentafluorophenyl-BF3K. Notably, employing aryl bromides instead of aryl iodides for the coupling with fluorinated aryl–Bpin compounds is also possible; however, increased amounts of CuI/phenanthroline catalyst is necessary, in a mixture of DMF and toluene (1:1).
A diverse range of π···π stacking interactions is observed in the cross-coupling products partly perfluorinated biaryl crystals. They range from arene–perfluoroarene interactions (2-(perfluorophenyl)naphthalene and 2,3,4-trifluorobiphenyl) to arene–arene (9-perfluorophenyl)anthracene) and perfluoroarene–perfluoroarene (2,3,4,5,6-pentafluoro-2’methylbiphenyl) interactions.
Chapter 3
In this chapter, the efficient Pd-catalyzed homocoupling reaction of aryl pinacol pinacol boronates (ArF–Bpin) that contain two ortho-fluorines is presented. The reaction must be conducted in a “noncoordinating” solvent such as toluene, benzene, or m-xylene and, notably, stronger coordinating solvents or ancillary ligands have to be avoided. Thus, the Pd center becomes more electron deficient and the reductive elimination becomes more favorable. The Pd-catalyzed homocoupling reaction of di-ortho-fluorinated aryl boronate derivatives is difficult in strongly coordinating solvents or in the presence of strong ancillary ligands, as the reaction stops at the [PdL2(2,6-C6F2+nH3-n)2] stage after the transmetalations without the reductive elimination taking place. It is known that the rate of reductive elimination of Ar–Ar from [ML2(Ar)(Ar)] complexes containing group-10 metals decreases in the order Arrich–Arpoor > Arrich–Arrich > Arpoor–Arpoor. Furthermore, reductive elimination of the most electron-poor diaryls, such as C6F5–C6F5, from [PdL2(C6F5)2] complexes is difficult and has been a challenge for 50 years, due to their high stability as the Pd–Caryl bond is strong. Thus, the Pd-catalyzed homocoupling of perfluoro phenyl boronates is found to be rather difficult.
Further investigation showed that stoichiometric reactions of C6F5Bpin, 2,4,6-trifluorophenyl–Bpin, or 2,6-difluorophenyl–Bpin with palladium acetate in MeCN stops at the double transmetalation step, as demonstrated by the isolation of cis-[Pd(MeCN)2(C6F5)2], cis-[Pd(MeCN)2(2,4,6-C6F3H2)2], and cis-[Pd(MeCN)2(2,6-C6F2H3)2] in quantitative yields. Thus, it can be concluded that the reductive elimination from diaryl-palladium complexes containing two ortho-fluorines in both aryl rings, is difficult even in a weakly coordinating solvent such as MeCN. Therefore, even less coordinating solvents are needed to make the Pd center more electron deficient. Reactions using “noncoordinating” arene solvents such as toluene, benzene, or m-xylene were conducted and found to be effective for the catalytic homocoupling of 2,6-C6F2+nH3-nBpin. The scope of the reactions was expanded. Using toluene as the solvent, the palladium-catalyzed homocoupling of ArF–Bpin derivatives containing one, two or no ortho-fluorines gave the coupled products in excellent yields without any difficulties.
DFT calculations at the B3LYP-D3/def2-TZVP/6-311+g(2d,p)/IEFPCM // B3LYP-D3/SDD/6-31g**/IEFPCM level of theory predicted an exergonic process and lower barrier (< 21 kcal/mol) for the reductive elimination of Pd(C6F5)2 complexes bearing arene ligands, compared to stronger coordinating solvents (acetonitrile, THF, SMe2, and PMe3), which have high barriers ( > 33.7 kcal/mol). Reductive elimination from [Pd(ηn-Ar)(C6F5)2] complexes have low barriers due to: (i) ring slippage of the arene ligand as a hapticity change from η6 in the reactant to ηn (n ≤ 3) in the transition state and the product, which led to less σ-repulsion; and (ii) more favorable π-back-bonding from Pd(ArF)2 to the arene fragment in the transition state.
Chapter 4
In this chapter, the efficient Pd-catalyzed C–Cl borylation of aryl chlorides containing two ortho-fluorines is presented. The reactions are conducted under base-free conditions to prevent the decomposition of the di-ortho-fluorinated aryl boronates, which are unstable in the presence of base. A combination of Pd(dba)2 (dba = dibenzylideneacetone) with SPhos (2-dicyclohexylphosphino-2′,6′-dimethoxybiphenyl) as a ligand is efficient to catalyze the C–Cl borylation of aryl chlorides containing two ortho-fluorine substituents without base, and the products were isolated in excellent yields. The substrate scope can be expanded to aryl chloride containing one or no ortho-fluorines and the borylated products were isolated in good to very good yield. This method provides a nice alternative to traditional methodologies using lithium or Grignard reagents.
Mycotoxins in agriculturally used plants can cause intoxication in animals and can lead to severe financial losses for farmers. The endophytic fungus Epichloë festucae var. lolii living symbiotically within the cool season grass species Lolium perenne can produce vertebrate and invertebrate toxic alkaloids. Hence, an exact quantitation of alkaloid concentrations is essential to determine intoxication risk for animals. Many studies use different methods to detect alkaloid concentrations, which complicates the comparability. In this study, we showed that alkaloid concentrations of individual plants exceeded toxicity thresholds on real world grasslands in Germany, but not on the population level. Alkaloid concentrations on five German grasslands with high alkaloid levels peaked in summer but were also below toxicity thresholds on population level. Furthermore, we showed that alkaloid concentrations follow the same seasonal trend, regardless of whether plant fresh or dry weight was used, in the field and in a common garden study. However, alkaloid concentrations were around three times higher when detected with dry weight. Finally, we showed that alkaloid concentrations can additionally be biased to different alkaloid detection methods. We highlight that toxicity risks should be analyzed using plant dry weight, but concentration trends of fresh weight are reliable.
Investigation of processes that contribute to the maintenance of genomic stability is one crucial factor in the attempt to understand mechanisms that facilitate ageing. The DNA damage response (DDR) and DNA repair mechanisms are crucial to safeguard the integrity of DNA and to prevent accumulation of persistent DNA damage. Among them, base excision repair (BER) plays a decisive role. BER is the major repair pathway for small oxidative base modifications and apurinic/apyrimidinic (AP) sites. We established a highly sensitive non-radioactive assay to measure BER incision activity in murine liver samples. Incision activity can be assessed towards the three DNA lesions 8-oxo-2'-deoxyguanosine (8-oxodG), 5-hydroxy-2'-deoxyuracil (5-OHdU), and an AP site analogue. We applied the established assay to murine livers of adult and old mice of both sexes. Furthermore, poly(ADP-ribosyl)ation (PARylation) was assessed, which is an important determinant in DDR and BER. Additionally, DNA damage levels were measured to examine the overall damage levels. No impact of ageing on the investigated endpoints in liver tissue were found. However, animal sex seems to be a significant impact factor, as evident by sex-dependent alterations in all endpoints investigated. Moreover, our results revealed interrelationships between the investigated endpoints indicative for the synergetic mode of action of the cellular DNA integrity maintaining machinery.
Chlamydia trachomatis (Ct) is an obligate intracellular human pathogen. It causes blinding trachoma and sexually transmitted disease such as chlamydia, pelvic inflammatory disease and lymphogranuloma venereum. Ct has a unique biphasic development cycle and replicates in an intracellular vacuole called inclusion. Normally it has two forms: the infectious form, elementary body (EB); and the non-infectious form, reticulate body (RB). Ct is not easily amenable to genetic manipulation. Hence, to understand the infection process, it is crucial to study how the metabolic activity of Ct exactly evolves in the host cell and what roles of EB and RB play differentially in Ct metabolism during infection. In addition, Ct was found regularly coinfected with other pathogens in patients who got sexually transmitted diseases (STDs). A lack of powerful methods to culture Ct outside of the host cell makes the detailed molecular mechanisms of coinfection difficult to study.
In this work, a genome-scale metabolic model with 321 metabolites and 277 reactions was first reconstructed by me to study Ct metabolic adaptation in the host cell during infection. This model was calculated to yield 84 extreme pathways, and metabolic flux strength was then modelled regarding 20hpi, 40hpi and later based on a published proteomics dataset. Activities of key enzymes involved in target pathways were further validated by RT-qPCR in both HeLa229 and HUVEC cell lines. This study suggests that Ct's major active pathways involve glycolysis, gluconeogenesis, glycerolphospholipid biosynthesis and pentose phosphate pathway, while Ct's incomplete tricarboxylic acid cycle and fatty acid biosynthesis are less active. EB is more activated in almost all these carbohydrate pathways than RB. Result suggests the survival of Ct generally requires a lot of acetyl-CoA from the host. Besides, both EB and RB can utilize folate biosynthesis to generate NAD(P)H but may use different pathways depending on the demands of ATP. When more ATP is available from both host cell and Ct itself, RB is more activated by utilizing energy providing chemicals generated by enzymes associated in the nucleic acid metabolism. The forming of folate also suggests large glutamate consumption, which is supposed to be converted from glutamine by the glutamine-fructose-6-phosphate transaminase (glmS) and CTP synthase (pyrG).
Then, RNA sequencing (RNA-seq) data analysis was performed by me in a coinfection study. Metatranscriptome from patient RNA-seq data provides a realistic overview. Thirteen patient samples were collected and sequenced by our collaborators. Six male samples were obtained by urethral swab, and seven female samples were collected by cervicovaginal lavage. All the samples were Neisseria gonorrhoeae (GC) positive, and half of them had coinfection with Ct. HISAT2 and Stringtie were used for transcriptomic mapping and assembly respectively, and differential expression analysis by DESeq2, Ballgown and Cuffdiff2 are parallelly processed for comparison. Although the measured transcripts were not sufficient to assemble Ct's transcriptome, the differential expression of genes in both the host and GC were analyzed by comparing Ct positive group (Ct+) against Ct-uninfected group. The results show that in the Ct+ group, the host MHC class II immune response was highly induced. Ct infection is associated with the regulation of DNA methylation, DNA double-strand damage and ubiquitination. The analysis also shows Ct infection enhances host fatty acid beta oxidation, thereby inducing mROS, and the host responds to reduce ceramide production and glycolysis. The coinfection upregulates GC's own ion transporters and amino acid uptake, while it downregulates GC's restriction and modification systems. Meanwhile, GC has the nitrosative and oxidative stress response and also increases the ability for ferric uptake especially in the Ct+ group compared to Ct-uninfected group.
In conclusion, methods in bioinformatics were used here in analyzing the metabolism of Ct itself, and the responses of the host and GC respectively in a coinfection study with and without Ct. These methods provide metabolic and metatranscriptomic details to study Ct metabolism during infection and Ct associated coinfection in the human microbiota.
Chapter 1
Thermally activated delayed fluorescence (TADF) materials provide a strategy to improve external quantum efficiencies of organic light emitting diodes (OLEDs). Because of spin-statistics, 25% singlet and 75% triplet excitons are generated in an electronic device. Conventional organic emitters cannot harvest the triplet excitons, due to low spin orbit coupling, and exhibit low external quantum efficiencies. TADF materials have to be designed in such a way, that the energy gap between the lowest singlet and triplet states (ΔES-T) is sufficiently small to allow reverse intersystem crossing (rISC) in organic systems. An established structure property relationship for the generation of TADF materials is the spatial separation of HOMO and LUMO via an orthogonal arrangement of donor and acceptor in donor-π-acceptor (D-π-A) compounds. This is achieved by increasing the steric bulk of the π-bridge. However, this is not always the most efficient method and electronic parameters have to be considered. In a combined experimental and theoretical study, a computational protocol to predict the excited states in D-π-A compounds containing the B(FXyl)2 (FXyl = 2,6-bis(trifluoromethyl)phenyl) acceptor group for the design of new TADF emitters is presented. To this end, the effect of different donor and π-bridge moieties on the energy gaps between local and charge-transfer singlet and triplet states was examined. To prove the computationally aided design concept, the D-π-B(FXyl)2 compounds Cbz-π (1), Cbz-Meπ (2), Phox-Meπ (3), Phox-MeOπ (4), and MeO₃Ph-FMeπ (5) were synthesized and fully characterized. The photophysical properties of these compounds in various solvents, polymeric film and in a frozen matrix were investigated in detail and show excellent agreement with the computationally obtained data (Figure 5.1). A simple structure-property relationship based on the molecular fragment orbitals of the donor and the π-bridge which minimize the relevant singlet-triplet gaps to achieve efficient TADF emitters is presented.
Chapter 2
Three-coordinate boron is widely used as an acceptor in conjugated materials. In recent years the employment of trifluoromethylated aryls was shown to improve the acceptor properties of such boranes. Astonishingly, the use of ortho-trifluoromethylated aryls in boron containing systems also improves the stability of those systems in regard to their inherent reactivity towards nucleophiles. Borafluorenes are stronger acceptors than their non-annulated triarylborane derivatives. In previous studies, the effect of trifluoromethylated aryls as the exo-aryl moieties in borafluorenes, as well as the effect of fluorination on the backbone, were examined. As the latter suffers from a very low stability, systems using trifluoromethyl groups, both on the exo-aryl as well as the borafluorene backbone were designed in order to maximize both the stability as well as the acceptor strength.
Three different perfluoroalkylated borafluorenes were prepared and their electronic and photophysical properties were investigated. The systems have four trifluoromethyl moieties on the borafluorene moiety as well as two trifluoromethyl groups at the ortho positions of their exo-aryl moieties. They differ with regard to the para-substituents on their exo-aryl moieties, being a proton (FXylFBf), a trifluoromethyl group (FMesFBf) or a dimethylamino group (p NMe2-FXylFBf), respectively. Furthermore, an acetonitrile adduct of FMesFBf was obtained and characterized. All derivatives exhibit extraordinarily low reduction potentials, comparable to those of perylenediimides. The most electron deficient derivative FMesFBf was also chemically reduced and its radical anion isolated and characterized. Furthermore, the photophysical properties of all compounds were investigated. All compounds exhibit weakly allowed lowest energy absorptions and very long fluorescent lifetimes of ca. 250 ns up to 1.6 μs; however, the underlying mechanisms differ. The donor substituted derivative p-NMe2-FXylFBf exhibits thermally activated delayed fluorescence from a charge transfer (CT) state, while the FMesFBf and FXylFBf borafluorenes exhibit only weakly allowed locally excited (LE) transitions due to their symmetry and low transition dipole moments, as suggested by DFT and TD-DFT calculations.
Chapter 3
Conjugated dendrimers find wide application in various fields, such as charge transport/storage or emitter materials in organic solar cells or OLEDs. Previous studies on boron containing conjugated dendrimers are scarce and mostly employ a convergent synthesis approach, lacking a simple, generally applicable synthetic access. A new divergent approach was designed and conjugated triarylborane dendrimers were synthesized up to the 2nd generation. The synthetic strategy consists of three steps:
1) functionalization, via iridium catalyzed C–H borylation;
2) activation, via fluorination of the generated boronate ester with K[HF2] or [N(nBu)4][HF2]; and
3) expansion, via reaction of the trifluoroborate salts with aryl Grignard reagents.
The concept was also shown to be viable for a convergent approach. All but one of the conjugated borane dendrimers exhibit multiple, distinct and reversible reduction potentials, making them potentially interesting materials for applications in molecular accumulators (Figure 5.7).
Based on their photophysical properties, the 1st generation dendrimers exhibit good conjugation over the whole system. The conjugation does not further increase upon expansion to the 2nd generation, but the molar extinction coefficients increase linearly with the number of triarylborane sub-units, suggesting a potential application as photonic antennas.
Chapter 4
A surprisingly high electronically-driven regioselectivity for the iridium-catalyzed C–H borylation using [Ir(COD)OMe]2 (COD = 1,5-cyclooctadiene) as the precatalytic species, bis(pinacolato)diboron (B2pin2) as the boron source and 4,4’-ditertbutyl-2,2’-bipyridin (dtbpy) as the ligand of D-π-A systems with diphenylamino (1) or carbazolyl (2) moieties as the donor, bis(2,6-bis(trifluoromethyl)phenyl)boryl (B(FXyl)2) as the acceptor, and 1,4-phenylene as the π-bridge was observed. Under these conditions, borylation was observed only at the sterically least encumbered para-positions of the acceptor groups. As boronate esters are versatile building blocks for organic synthesis (C–C coupling, functional group transformations), the C–H borylation represents a simple potential method for post-functionalization by which electronic or other properties of D-π-A systems can be fine-tuned for specific applications. The photophysical and electrochemical properties of the borylated (1-(Bpin)2) and unborylated (1) diphenylamino-substituted D-π-A systems were investigated. Interestingly, the borylated derivative exhibits coordination of THF to the boronate ester moieties, influencing the photophysical properties and exemplifying the non-innocence of boronate esters.